rs30017231 SNP Detail

Summary

• ID
  rs30017231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACCACCA GCACACATTT GTTCTTCTGT CTCCACTCCC
  ATCTCTAGTA GCTAGTTGCT GGGCTTTAGG CTCTCATTAC CTCTTGTTTG GTGGCTTGAG
  Y
  GATGGCTCCA AGAACCTGTC CTGGGAATTC CCCAGGCTTT GGAGAGGGCT GTGTGGCTGC
  CACCTGGAGT GAGCATCCAG GATGGCCATG CCCTGTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45884723	mCV23115564	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss133421931	ENSMUSSNP1805667	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30017231					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806752 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	197 bp distal
Tssr57872	transcription start site region 57872	1542 bp downstream
Tssr57873	transcription start site region 57873	1496 bp downstream
Tssr57874	transcription start site region 57874	1479 bp downstream
Tssr57875	transcription start site region 57875	1459 bp downstream
Tssr57876	transcription start site region 57876	1429 bp downstream
Tssr57877	transcription start site region 57877	488 bp downstream
Tssr57878	transcription start site region 57878	475 bp downstream
Tssr57879	transcription start site region 57879	445 bp downstream
Tssr57880	transcription start site region 57880	398 bp downstream
Tssr57881	transcription start site region 57881	215 bp downstream
Tssr57882	transcription start site region 57882	109 bp downstream
Tssr57883	transcription start site region 57883	1156 bp upstream
Tssr57884	transcription start site region 57884	1540 bp upstream