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rs30017345 SNP Detail
Summary
  • ID
    rs30017345
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:43816340 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCCCCTCCCC CTTCTTTATA ACCCCGTGTT TCTGAATATT
    ATAATTGAGC TTTGATCAGG ATCTTGTTTT AGCTCTGTTC TTTCTCTCAT CCATCTAGTT
    Y
    CCTCTTTCAG CCCGAGTCTG CTGCTTCAGC CATACCCCAT TCCTTGTGAG CCGCTGGACA
    GCCCACAACA GTTTGGTGCC TGAACAGGGA CCTGAAGAA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
LG/J
SM/J
ss45887086 mCV24667729 ABI CRAMUS_MOUSE f SNP C C T
ss133132556 ENSMUSSNP5915617 ENSEMBL ENSEMBL_Sanger f SNP C C
ss321787558 CHEV_6_43789405 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
LG/J
SM/J
rs30017345 SNP C C T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:43816340 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm35163 predicted gene, 35163 within coordinates
Rr144146 regulatory region 144146 131 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory