rs30017477 SNP Detail

Summary

• ID
  rs30017477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106520861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG AAAAGCCCAC AGTCGGTGTC
  Y
  CACTTCCCAC ACCATATCGT AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46363674	mCV23588591	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136939131	ENSMUSSNP6492716	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss323186505	CHEV_9_106545993	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30017477					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106520861 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	93 bp downstream
Grm2	glutamate receptor, metabotropic 2	872 bp downstream
Rr686373	regulatory region 686373	146 bp distal
Rr686374	regulatory region 686374	269 bp distal
Rr686375	regulatory region 686375	322 bp proximal