rs30017994 SNP Detail

Summary

• ID
  rs30017994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68913667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCTCC CAGGACGGTG
  CCCACAGCGA CGAAGAGATG GAGCAACCGG CCGGCGAAGC GGAGAGCGCT GCACCCGCAA
  GTGAGTGACA GGTCGGGATC CCCGTGCGTC GGAAGCCTGT GGAGACCCTC TGAGGGTGGC
  GGGGCGCAGG CGACGACAGG TTGATTTGGG AAGCTCCGGA AAGCCGTTCT TTGGTTTTCA
  R
  AGGAATTCCA TGCAGTTTGC TCTAACGGTT CTGGAAGATA TGAGAGTGAG CGGAAAACTT
  GCGTTGTGAG TTTCTGTGTT TTAGAGTAGT ACTGACCTCT TTCTCATATT TCCGCTGAAA
  GCGGCATGGG TGCTGAGCGC CTCTGCGCCC TTAGACTGGA GTGAATGTGA TGTGGAGTTG
  CGTGACTCGC CCTTTACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45388328	mCV24988202	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135264499	ENSMUSSNP807736	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A		A
ss320791742	CHEV_3_68810256	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30017994					SNP	G	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68913667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	within coordinates
Ift80	intraflagellar transport 80	1775 bp upstream
Rr397713	regulatory region 397713	1545 bp downstream
Rr578108	regulatory region 578108	1802 bp distal
Rr578109	regulatory region 578109	1333 bp distal
Rr578110	regulatory region 578110	within coordinates
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr901	transcription start site region 901	1921 bp upstream
Tssr29506	transcription start site region 29506	1603 bp downstream
Tssr29507	transcription start site region 29507	1313 bp downstream
Tssr29508	transcription start site region 29508	1192 bp downstream
Tssr29509	transcription start site region 29509	1021 bp downstream
Tssr29510	transcription start site region 29510	980 bp downstream
Tssr29511	transcription start site region 29511	849 bp downstream
Tssr29512	transcription start site region 29512	592 bp downstream
Tssr29513	transcription start site region 29513	388 bp downstream
Tssr29514	transcription start site region 29514	262 bp downstream
Tssr33516	transcription start site region 33516	1956 bp upstream
Tssr33517	transcription start site region 33517	1867 bp upstream
Tssr33518	transcription start site region 33518	1835 bp upstream
Tssr33519	transcription start site region 33519	1789 bp upstream
Tssr33520	transcription start site region 33520	1770 bp upstream
Tssr33521	transcription start site region 33521	1749 bp upstream
Tssr33522	transcription start site region 33522	89 bp downstream