rs30018294 SNP Detail

Summary

• ID
  rs30018294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42680533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGAGTCA GCTTCCTGGA
  CTCTGGTCTC TGAACTACAG AGGTTGCGAG AAGAGAGGGA CCAGGCAGCT GCTCAACTTT
  TGTGTACACA GATTATCCTC CAGGAGGCAA TGGATGAGCG GGAAATACTT CGTGGGAGGC
  TGCTACAAGC AAAGAGATCT GCACTGCCTG TTGTGCCTGA ACGTGGAATG GAATATGGTA
  R
  AACATCACTG TTGTCGTTTG AGGAAAAGGA GCTGGGAGAC CTGGAATTTA TAGGGTCCCA
  GAACATGTCC CATTTGGAGG CCCAGATACC AATCTTGTCC TGCCTGCCTG GACTTTCAAG
  TCCTTGGGTC CAAGCAATGG ATCCCTTTCT TCAAATGACT ATGGCACATC CAGTACCACT
  CAAAGCAAAA TTCTCCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46904914	NES10952548	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30018294					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904914	NES10952548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42680533 () rs orientation: forward

Symbol	Name	Function Class
Gm14579	predicted gene 14579	1631 bp upstream
Tex13c1	TEX13 family member C1	within coordinates
Tssr160863	transcription start site region 160863	723 bp downstream
Tssr160864	transcription start site region 160864	712 bp downstream
Tssr160865	transcription start site region 160865	701 bp downstream
Tssr160866	transcription start site region 160866	684 bp downstream