rs30018299 SNP Detail

Summary

• ID
  rs30018299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42680973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACTCAGA AGCAACAGCA
  ACAGCCATGA TCACAGGCTT ACCTCAGATA GCTCCTTCAG GAATCCAACC ATCTAGCTTG
  TGTGTTACAT TGGAGTCCCA AGAAACAATA GCTTCTGCTT TGGACCAAAT CTGCCCTAGG
  CAGAAGGAAT GCTCTGAGAT CCTCCAGGAT GTAAGTCACC TGGCAGACAG CATAAGCTGC
  Y
  GTGAAGGAGA AGGTCCAGAG AAACCTCAAG GAACATCTCT CCATGGGGAC AGCAGCAACA
  ATAGCCACAA AGATAATCAG GCCATACCCC AGATAATGGC TGCCACTGAG AAGAAAAATC
  TAATGATGCA CCAGGGAACA GCTGCAGTGG AGGTCAACAG TAACCACAGC ATAAAGGAAG
  AACCAGTAAT GCCCAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46904920	NES10952550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30018299					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46904920	NES10952550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42680973 () rs orientation: forward

Symbol	Name	Function Class
Tex13c1	TEX13 family member C1	within coordinates
Tssr160863	transcription start site region 160863	1163 bp downstream
Tssr160864	transcription start site region 160864	1152 bp downstream
Tssr160865	transcription start site region 160865	1141 bp downstream
Tssr160866	transcription start site region 160866	1124 bp downstream