rs30018546 SNP Detail

Summary

• ID
  rs30018546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58294517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTTTTGC GGGAACACTT CATTGACTGC TCCTTCCCCG
  CGATGCAGTT CTGAATCCTC CCTGTAGCAG GGGGTCCCAC TTCTTGTGAG CACCAGACTC
  R
  ACAGCAAAGC AGACGCTACA CCAGGATCCT TCTGGAGAGC TTGATTGCAG AGGCGAAAAG
  ACCCCAAGCC CAGAACTGGT GCTACTTATA TAGGCCTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39142975	mCV24562266	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss149066075	ENSMUSSNP117539	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss324352923	CHEV_13_58248064	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30018546					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58294517 () rs orientation: forward

Symbol	Name	Function Class
1700066J03Rik	RIKEN cDNA 1700066J03 gene	246 bp upstream
Cpgi5721	CpG island 5721	1889 bp proximal
Gm48295	predicted gene, 48295	1040 bp downstream
Rr480978	regulatory region 480978	1574 bp proximal
Rr480979	regulatory region 480979	1843 bp proximal
Tssr120063	transcription start site region 120063	1810 bp upstream
Tssr120064	transcription start site region 120064	1835 bp upstream
Tssr120065	transcription start site region 120065	1850 bp upstream