rs30019460 SNP Detail

Summary

• ID
  rs30019460
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122580909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTATTTT TCTCTCCTCT
  TCTTTTCTTT TCTTTTCTTC TTCTTTTCTC CTACTTTTTG AGACAAGATT TCTTTATGTG
  GCTCTGGCTG TCTATAACTC TCTATATAGA CCACGCTAGC CTCAACTCAG AGTTCCACCT
  ACCTCTGTCT CCCAAGTGCT GGGATTACAG ATGTATAAAA AGAATGATTT TTGAACTAGG
  S
  GATAGTGGTG CACGCCTTTA ATCCCAGCAC ATGGGAGGCA GAAGCAGGCG GATCTCTGAG
  TTCAAGACCA GCATAGCCTA CTGAGAGAAT TCCAGGATGG CCAGGACTAC ACAGAAACCC
  TGTCTCACAT AAACAAAAAG TCCAGATGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTACA GAAGAGAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45886434	mCV22300202	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss133609458	ENSMUSSNP6070652	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C		C
ss321934194	CHEV_6_122553968	CHEVERUD	SCREENING_POP	f	SNP					G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30019460					SNP	G	G	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122580909 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	1506 bp upstream
Gdf3	growth differentiation factor 3	1453 bp downstream
Rr399899	regulatory region 399899	1438 bp downstream
Rr399900	regulatory region 399900	160 bp upstream
Rr638222	regulatory region 638222	1590 bp distal
Rr638223	regulatory region 638223	1016 bp distal
Rr638224	regulatory region 638224	1301 bp proximal
Rr638225	regulatory region 638225	1614 bp proximal
Rr638226	regulatory region 638226	1722 bp proximal
Tssr58686	transcription start site region 58686	1245 bp downstream
Tssr62923	transcription start site region 62923	1606 bp upstream
Tssr62924	transcription start site region 62924	1550 bp upstream
Tssr62925	transcription start site region 62925	1528 bp upstream
Tssr62926	transcription start site region 62926	838 bp upstream
Tssr62927	transcription start site region 62927	426 bp downstream