rs30020445 SNP Detail

Summary

• ID
  rs30020445
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72719297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC GTAGGGGAGA AGCAGTTGAA
  S
  GCTTTGACAA AACTATGGGA GATGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45887227	mCV25135584	ABI	CRAMUS_MOUSE	f	SNP			G					G		C
ss51693339	NES14824375	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C		G	C	G	G		G	G	G	G		G
ss133286980	ENSMUSSNP1464628	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
ss321822714	CHEV_6_72692308	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30020445					SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693339	NES14824375	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72719297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17550	CpG island 17550	1448 bp distal
Gm31249	predicted gene, 31249	1703 bp upstream
Gm67726	predicted gene, 67726	within coordinates
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates
Tssr57163	transcription start site region 57163	1706 bp upstream