rs30020718 SNP Detail

Summary

• ID
  rs30020718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129157090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACAAAGTC CCCAATGAAG GAGCTAGAGA AAGTACCCAG
  GGAGCTAAAG GGATCTGCAA CCCTATAGGT GGAACATCAT TATGAACTAA CCAGTACCCC
  R
  GAGCTCTTGA CTCTAGCTGC ATATGTATCA AAAGATGGCC TAGTCGGCCA TCACTGTAAA
  GAGAGGCCCA TTGGACTTGC AAACTTTATA TGCCCCAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45888000	mCV24120181	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30020718					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129157090 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	488 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	within coordinates
Rr368193	regulatory region 368193	210 bp upstream
Rr639386	regulatory region 639386	641 bp distal
Rr639387	regulatory region 639387	within coordinates
Rr639388	regulatory region 639388	344 bp proximal
Rr639389	regulatory region 639389	499 bp proximal
Rr639390	regulatory region 639390	1517 bp proximal
Tssr59096	transcription start site region 59096	486 bp upstream
Tssr59097	transcription start site region 59097	512 bp upstream
Tssr59098	transcription start site region 59098	790 bp upstream
Tssr59099	transcription start site region 59099	824 bp upstream
Tssr59100	transcription start site region 59100	848 bp upstream
Tssr59101	transcription start site region 59101	1141 bp upstream
Tssr59102	transcription start site region 59102	1216 bp upstream
Tssr59103	transcription start site region 59103	1725 bp upstream
Tssr59104	transcription start site region 59104	1795 bp upstream