rs30020902 SNP Detail

Summary

• ID
  rs30020902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135285679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG CAGGAGGAGC TGAGAGTTTT
  R
  CATCTTATTC TGAAGTCCAC CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45887535	mCV24021567	ABI	CRAMUS_MOUSE	f	SNP	G		A	G
ss133802820	ENSMUSSNP3786153	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321986310	CHEV_6_135258699	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30020902					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135285679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	1250 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Pbp2	phosphatidylethanolamine binding protein 2	448 bp downstream
Tssr63760	transcription start site region 63760	1668 bp downstream
Tssr63761	transcription start site region 63761	1693 bp downstream