rs30021816 SNP Detail

Summary

• ID
  rs30021816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTAGAG GTGATGTGGG
  ACAGTGACCC ACAACACACA AGGAAAAGGA TTTTCAGTCA CTCTGAGGAC ACTTTTCAAA
  GCCATTGTCC TAGGAAACAC TGCAGAAAAG CGGGTCACGC GCTTTATCCA CGGCGGACGG
  GGATTAAGTG AAGCATTCTT CCCCCCTCCC CCCATTTGTC CTTTGTTTCT CTTGCCATTG
  R
  TTTTGGTTAT GAGACTTCTT TTTCTAAAGG ATTACCCGAA ATCTCTTCTC CTGTTGGTTT
  TGAGAGCGCT CCTGGCCCCT TTCTGAGTTT CCAAGGCAGG CTATGGAAAA CCATCAGATT
  TGTGAGCTGT GGGAGGAAGG CTTGCCATGG GCCAACATTA CAGTCTTTCT CTGGGGCATG
  TTGTTCCAGC ACAGGGAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39639787	mCV23909276	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss147617006	ENSMUSSNP5397526	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30021816					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604135 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	450 bp proximal
Gm58829	predicted gene, 58829	372 bp upstream
Mbp	myelin basic protein	373 bp downstream
Rr541827	regulatory region 541827	1875 bp distal
Tssr152152	transcription start site region 152152	1885 bp downstream
Tssr152153	transcription start site region 152153	1761 bp downstream
Tssr152154	transcription start site region 152154	1738 bp downstream
Tssr152155	transcription start site region 152155	1702 bp downstream
Tssr152156	transcription start site region 152156	1633 bp downstream
Tssr152157	transcription start site region 152157	1555 bp downstream
Tssr152158	transcription start site region 152158	1518 bp downstream
Tssr152159	transcription start site region 152159	1494 bp downstream
Tssr152160	transcription start site region 152160	1448 bp downstream
Tssr152161	transcription start site region 152161	1432 bp downstream
Tssr152162	transcription start site region 152162	1411 bp downstream
Tssr152163	transcription start site region 152163	1394 bp downstream
Tssr152164	transcription start site region 152164	1349 bp downstream
Tssr152165	transcription start site region 152165	1276 bp downstream
Tssr152166	transcription start site region 152166	1240 bp downstream
Tssr152167	transcription start site region 152167	1208 bp downstream
Tssr152168	transcription start site region 152168	1179 bp downstream
Tssr152169	transcription start site region 152169	1126 bp downstream
Tssr152170	transcription start site region 152170	1018 bp downstream
Tssr152171	transcription start site region 152171	974 bp downstream
Tssr152172	transcription start site region 152172	871 bp downstream
Tssr152173	transcription start site region 152173	856 bp downstream
Tssr152174	transcription start site region 152174	822 bp downstream
Tssr152175	transcription start site region 152175	787 bp downstream
Tssr152176	transcription start site region 152176	598 bp downstream
Tssr152177	transcription start site region 152177	418 bp downstream
Tssr154083	transcription start site region 154083	1780 bp upstream
Tssr154084	transcription start site region 154084	1726 bp upstream
Tssr154085	transcription start site region 154085	1469 bp upstream
Tssr154086	transcription start site region 154086	923 bp upstream
Tssr154087	transcription start site region 154087	702 bp upstream
Tssr154088	transcription start site region 154088	673 bp upstream
Tssr154089	transcription start site region 154089	555 bp upstream
Tssr154090	transcription start site region 154090	495 bp upstream