rs30022039 SNP Detail

Summary

• ID
  rs30022039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76474288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTATCT CATTACATAT
  AAACAAATTA TGTAAATTCT ACTAAAACAA TCTAAAGATA TTTTCTCTTA AGTTTTTGAA
  TAAATGATGC TTACCATGAG TGGCATTTGT GGCTGTCAAT ATAATTCCAC AACTCTGAAT
  AGATTATTTT TACTATTATA GTACTGGTAA GCAGCTTACC TTTTGGTTGA AGGTCACTAG
  Y
  TATTTTAAAA TAAAACAGCC ATTAGCCTTA ATCTCAGGAG GATTAGGCAA AAATAAAACT
  CAGGAGTTTG AAAGCTTGCA GGTCTAAAAA GAGAGTATAG GAGATTCTGG GACATATCAA
  GATTGGCATC AAATAAAATA AATTAAGATG CAACAAAATA AAATATTAAT AAATATGCAA
  GGTTCTATGA CAGCATTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45388074	mCV24200822	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135341124	ENSMUSSNP2564150	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs30022039					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76474288 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	540 bp proximal