rs30022119 SNP Detail

Summary

• ID
  rs30022119
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60803657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTCTC CCTTCCCCCC
  CCTCCTTCCC TCCCTCCCTC CCTCGTTGGC ATTGTGGCTC TTAACCCTGG AAGCCCAGGC
  TCCTCTGGGT TTCAGCCGAG CCTTAGGATG TCACTAAGAA TCCCAGCACC TCACCATGCC
  TCAGCATGAG CCAGGAAAGA GACGTGGACA CACATTGGGC AAAAGGCACA TTCCTGTCCC
  K
  TTGGCCACCT CAGGTCACCA GCGGGTCTGT CAGGCAGGGT TGCAGGGCAC CCTCAGGGCT
  ACCCAGAGAG TGAATTTGGT CTCATTGGTA ACAACTTACA AGAACTAACT CAAGGTCCTA
  CAAGACTTAT TTTATCATCT GTCCCTCTCA GGACACTTGC CACGGAACCT CCCAGCCCCC
  ATCTAGCCCC ATCCCTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39143235	mCV25282107	ABI	CRAMUS_MOUSE	f	SNP		G					T		T
ss61825831	NES17748904	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	T	T	T		G	T	T	G		G	G	G		G
ss324366854	CHEV_13_60757204	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30022119					SNP	G	G	T	T	T	T	T	G	T	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61825831	NES17748904	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60803657 () rs orientation: forward

Symbol	Name	Function Class
Dapk1	death associated protein kinase 1	within coordinates
Rr273140	regulatory region 273140	1457 bp distal
Rr276884	regulatory region 276884	within coordinates
Rr284608	regulatory region 284608	1221 bp distal