rs30022177 SNP Detail

Summary

• ID
  rs30022177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110810009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAT AAGGAATTTA TGAAAGCATA
  Y
  ATTGAAGACC TTAAAGAAAG AGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46364508	mCV23463571	ABI	CRAMUS_MOUSE	f	SNP						T	C
ss47781779	NES11994381	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T		C		T	T		T
ss136960961	ENSMUSSNP5280390	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss323195231	CHEV_9_110883445	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30022177					SNP	C	C	C	C	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781779	NES11994381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110810009 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr192791	regulatory region 192791	1609 bp distal
Rr207418	regulatory region 207418	1992 bp proximal