rs30022295 SNP Detail

Summary

• ID
  rs30022295
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49023528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA GAATAGGCCG GGTATCATGC
  M
  GGTCTGAAAC CAGCTTTCTT GGTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45887441	mCV22727651	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		C
ss51658476	NES14824248	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	A	C		C	C	C	A		A	A	A	C		A
ss321795252	CHEV_6_48996593	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30022295					SNP	A	A	A	C	C	A	C	A	C	C	C	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658476	NES14824248	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49023528 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	144 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	156 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	1277 bp downstream
Tssr56320	transcription start site region 56320	1237 bp downstream
Tssr56321	transcription start site region 56321	1223 bp downstream
Tssr56322	transcription start site region 56322	1205 bp downstream
Tssr56323	transcription start site region 56323	1169 bp downstream
Tssr56324	transcription start site region 56324	1139 bp downstream
Tssr56325	transcription start site region 56325	983 bp downstream
Tssr56326	transcription start site region 56326	968 bp downstream
Tssr56327	transcription start site region 56327	914 bp downstream
Tssr56328	transcription start site region 56328	836 bp downstream
Tssr56329	transcription start site region 56329	760 bp downstream
Tssr56330	transcription start site region 56330	589 bp downstream
Tssr56331	transcription start site region 56331	544 bp downstream
Tssr56332	transcription start site region 56332	471 bp downstream
Tssr56333	transcription start site region 56333	433 bp downstream
Tssr56334	transcription start site region 56334	423 bp downstream
Tssr56335	transcription start site region 56335	403 bp downstream
Tssr56336	transcription start site region 56336	376 bp downstream
Tssr56337	transcription start site region 56337	353 bp downstream
Tssr56338	transcription start site region 56338	337 bp downstream
Tssr56339	transcription start site region 56339	323 bp downstream
Tssr56340	transcription start site region 56340	133 bp downstream
Tssr56341	transcription start site region 56341	116 bp upstream
Tssr56342	transcription start site region 56342	148 bp upstream
Tssr56343	transcription start site region 56343	698 bp upstream
Tssr56344	transcription start site region 56344	712 bp upstream
Tssr56345	transcription start site region 56345	730 bp upstream
Tssr56346	transcription start site region 56346	767 bp upstream
Tssr56347	transcription start site region 56347	805 bp upstream
Tssr56348	transcription start site region 56348	831 bp upstream
Tssr56349	transcription start site region 56349	1154 bp upstream
Tssr56350	transcription start site region 56350	1181 bp upstream
Tssr56351	transcription start site region 56351	1211 bp upstream
Tssr56352	transcription start site region 56352	1224 bp upstream
Tssr56353	transcription start site region 56353	1293 bp upstream
Tssr56354	transcription start site region 56354	1308 bp upstream
Tssr56355	transcription start site region 56355	1333 bp upstream
Tssr56356	transcription start site region 56356	1351 bp upstream
Tssr56357	transcription start site region 56357	1363 bp upstream
Tssr56358	transcription start site region 56358	1381 bp upstream
Tssr56359	transcription start site region 56359	1396 bp upstream
Tssr56360	transcription start site region 56360	1433 bp upstream
Tssr60846	transcription start site region 60846	1202 bp upstream
Tssr60847	transcription start site region 60847	1119 bp upstream
Tssr60848	transcription start site region 60848	186 bp upstream
Tssr60849	transcription start site region 60849	735 bp downstream
Tssr60850	transcription start site region 60850	790 bp downstream
Tssr60851	transcription start site region 60851	1260 bp downstream
Tssr60852	transcription start site region 60852	1303 bp downstream
Tssr60853	transcription start site region 60853	1313 bp downstream
Tssr60854	transcription start site region 60854	1332 bp downstream
Tssr60855	transcription start site region 60855	1365 bp downstream
Tssr60856	transcription start site region 60856	1403 bp downstream
Tssr60857	transcription start site region 60857	1432 bp downstream