rs30024110 SNP Detail

Summary

• ID
  rs30024110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15198749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCTTTG GGAAACAATA
  CACACACACA CAAACACACA CACACACACA CACACACACA AGCACACGCG CGCCCTCTTA
  TTACATCTGT CCGAGGAGAA GAGGATCTTG GAGGTTATAC TTCTGGGGAA TTCTTCTCTA
  AGCGCTACTA GAGAAGCTGT CAGATTTGTC ATGGCATTCT GTTCTTCGTC TCAGCTCTGG
  M
  TATATGTAAA GAAATGTACT AGCTTCCCAG AGCTTGTAGC AGTGGGCAAC TAAGTGGACA
  CACATGGCTC GGAGCTCAGC TCAAGAGCCA GCCCAGACTA GTTGCCCACC GCCACTTCTG
  GTGTGCCTGC ATTTTGTCCC GTGATAGTGC CAGGTTTTGG AACCTTGGAG AATTGCTGCA
  GTGCAGAGAA CTCAGTTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39641026	mCV25032219	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss146654525	ENSMUSSNP6124282	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss325532718	CHEV_18_15224201	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30024110					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15198749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	522 bp distal
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	within coordinates
Rr534350	regulatory region 534350	1678 bp distal
Tssr152512	transcription start site region 152512	1578 bp upstream
Tssr152513	transcription start site region 152513	1552 bp upstream
Tssr152514	transcription start site region 152514	1537 bp upstream
Tssr152515	transcription start site region 152515	1466 bp upstream
Tssr152516	transcription start site region 152516	1357 bp upstream
Tssr152517	transcription start site region 152517	1336 bp upstream
Tssr152518	transcription start site region 152518	1318 bp upstream
Tssr152519	transcription start site region 152519	1249 bp upstream
Tssr152520	transcription start site region 152520	1216 bp upstream