rs30024534 SNP Detail

Summary

• ID
  rs30024534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCTTGAG GTGTGCTCTC TTCTGACGCC CTCACTCTCT
  CCTTTCGTTT ACCACCAGCA CACATTTGTT CTTCTGTCTC CACTCCCATC TCTAGTAGCT
  R
  GTTGCTGGGC TTTAGGCTCT CATTACCTCT TGTTTGGTGG CTTGAGCGAT GGCTCCAAGA
  ACCTGTCCTG GGAATTCCCC AGGCTTTGGA GAGGGCTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45888185	mCV23115554	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss51375317	NES13725675	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G	G	A	A	A	A	A	A	A
ss133421928	ENSMUSSNP3985193	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30024534					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375317	NES13725675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806705 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	150 bp distal
Tssr57872	transcription start site region 57872	1495 bp downstream
Tssr57873	transcription start site region 57873	1449 bp downstream
Tssr57874	transcription start site region 57874	1432 bp downstream
Tssr57875	transcription start site region 57875	1412 bp downstream
Tssr57876	transcription start site region 57876	1382 bp downstream
Tssr57877	transcription start site region 57877	441 bp downstream
Tssr57878	transcription start site region 57878	428 bp downstream
Tssr57879	transcription start site region 57879	398 bp downstream
Tssr57880	transcription start site region 57880	351 bp downstream
Tssr57881	transcription start site region 57881	168 bp downstream
Tssr57882	transcription start site region 57882	62 bp downstream
Tssr57883	transcription start site region 57883	1203 bp upstream
Tssr57884	transcription start site region 57884	1587 bp upstream