rs30025728 SNP Detail

Summary

• ID
  rs30025728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18792883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTAAAG AGATTCTACA
  CAACAAAGGA AACATAGACA GTAAAGAAAC AACCTGAAAT CGTGGGGAAA ATTTATTCCA
  GTTATTCATC TGTCAGTCGA TTAATACAGA ATATACAAAA TACTCAAACT CTCTAAATTT
  CTTTGGCCTT CATGGCAGAA GCAATATGAG GAAAGGAATG TTATTACTTT GGAAATTGTC
  R
  CAATAAGACA CATGTGTTGT ACTGCAGCTG TGAATCTAAG GCCTACCAAC TTTAGAAGTT
  GATCTGTGGA AAATATGGCT ATCTTGCCAA GTGCAAGAGA AATTATAAGT GTCAAGGCTG
  GACAAACAAG GTACTAAAAA TTGTCTATTG CAGATTCAGA CATGGATTCT TTGAAGGAAC
  CACACCTCAA CCCAAGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45887183	mCV23957270	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss51246179	NES13802753	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	A	G	G	G	G
ss133041129	ENSMUSSNP4202853	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30025728					SNP	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246179	NES13802753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18792883 () rs orientation: forward

Symbol	Name	Function Class
Gm43228	predicted gene 43228	within coordinates