rs30026058 SNP Detail

Summary

• ID
  rs30026058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGAAC AGAGGTTAAA
  AAACGCATCC TGGGCCGGCC GGCCAGTCCT CGCCATTCAC CACGATAGAA GTTTCTGGCT
  CGGGTTCCGG CTACCGACTG GAAGCACCAA GACCTCAAAT CTATTACCGC TGGTCGGGTA
  AAAAAGTCAA CTAAAACAAG GACCAGAAGA AGCCGCCACC TTAAGCCTTC CCTGGCCCCG
  Y
  CCCTTAGCCC TACCCACCAT TAATAAGCTC TCCATAAGGC CTCCGCTTCC GGCCACGACG
  GCTACGCACC CGCCCCACCC TGACCCCGCC CCTAGCGGTC CGGCCCCACC CCGCCCTCTA
  GCTCCGCCCC GTCCCAGACA GAACCCGCCC GGGACGGCCT TCGCCTAGGT GGACGCTAGG
  GGCGCCGCGG AGCCGTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39143199	mCV23768857	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30026058					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	224 bp upstream
Gm19308	predicted gene, 19308	1791 bp downstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	within coordinates
Rr483661	regulatory region 483661	within coordinates
Rr483662	regulatory region 483662	21 bp distal
Rr483663	regulatory region 483663	108 bp proximal
Rr483664	regulatory region 483664	416 bp proximal
Tssr120622	transcription start site region 120622	189 bp upstream
Tssr120623	transcription start site region 120623	580 bp upstream
Tssr120624	transcription start site region 120624	627 bp upstream
Tssr120625	transcription start site region 120625	653 bp upstream
Tssr120626	transcription start site region 120626	680 bp upstream
Tssr123429	transcription start site region 123429	39 bp upstream
Tssr123430	transcription start site region 123430	384 bp downstream