rs30026216 SNP Detail

Summary

• ID
  rs30026216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45014333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATGGTT CCCATTTCCC
  CAGAAGAGCT GCTCTTGCAT ATTTAGTTCC TTCCAAGAAT CAGAAAGAGA TGGAAGGGTC
  CTGTGTGATG TAGGTGCCTT GCTGGATGTG AAAGTCCCAT TTAGTGTATG TAGCGTTCCT
  TCTAGGTGCG CTTGAATCGA GGTTCAGAAG TTAACTCTGT GTGTTTCTTA TGCCTTACAG
  Y
  TCAGTAAGTT CTATGGCTTC TGTGAAGAGC CTGGAGAACA AAGAGAAGAT TAATCCAGAG
  GTGAGAGAAG GGCCTGCCTT CTGAGGGGGA CACGGATGCA CACACACTTT AGCAGGAGAC
  CCTGGGGAGG TGTAGGGTGG AGACTGCCAC TCGGGAACTG TGTCTTACCC ATTAGTCTCA
  GCTCTCAGCT CATAGGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46365097	mCV24046715	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss61388972	NES16766742	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C		T	C	C	T	C	T	C
ss136405336	ENSMUSSNP5310038	ENSEMBL	ENSEMBL_Sanger	f	SNP	T								C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30026216					SNP	T	C	C	C	T	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388972	NES16766742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45014333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jaml	junction adhesion molecule like			Coding-Synonymous
				Splice-Site
Rr677840	regulatory region 677840			within coordinates
Tssr84725	transcription start site region 84725			151 bp downstream
Tssr84726	transcription start site region 84726			801 bp upstream
Tssr84727	transcription start site region 84727			831 bp upstream
Tssr84728	transcription start site region 84728			859 bp upstream