rs30026842 SNP Detail

Summary

• ID
  rs30026842
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63414776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTAATAA GTCTGCTTCT
  CACTGGGGCT CACTCAGACC ACCCCCAAAG GGGAACTGTC TCATTAGGAT AGGGAGCTGA
  AGAAAAATAG TTTCCTTACC AATTTTCAAA ATTTAGCAGA AGGGCAAGAT TCAAGAGAAG
  AGAGACCTAG TCTGACACTA GTTTTTATGG CTGGTGTCTG CTCCAACCAG AGTACTCTTC
  W
  TTTCTGACAT TGCTGACATT CATCATTGCT GACAATGATG AATTTTAGCT TTGGGAGACC
  TTAGGAGAGC AGGACCATAA CGACAAACCT CTCTGGGTCT ATGTATGTAT GTATGTATGT
  ATGTATGTGT GTGTGTGTGT GTGTGTGTGT GTATGTATGT ATGTATGTAT GTATGTATGT
  ATGATGTCTC TATCTGTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss47405502	NES11048001	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30026842					SNP	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47405502	NES11048001	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63414776 () rs orientation: forward

Symbol	Name	Function Class
Gm71047	predicted gene, 71047	1770 bp upstream