rs30026933 SNP Detail

Summary

• ID
  rs30026933
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34757052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAATGCC ACGGCTTTAA GGTGGTCTGC TTCCAAAAAA
  CAACAACAAA AAAGGCAGTG TTACGTTAAA AAAAAAAAAA GGTAATAAGG TTCTCATTTT
  W
  AAAAAACACT TCTAAAACGT TCAGTTTGAA CGCAGGCTTA TTTCCCACGA TTCCCAGCGG
  CCAAGGGCTC CGACTGCCGG CCTACTACTT TGCATAAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39640760	mCV22875756	ABI	CRAMUS_MOUSE	f	SNP		A				T		A
ss49256694	NES12717575	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A		A	A	T	T		A	A	T	A		A
ss146941869	ENSMUSSNP2575468	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325582393	CHEV_18_34783653	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30026933					SNP	A	A	T	T	A	T	A	A	T	T	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256694	NES12717575	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34757052 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	within coordinates
Cpgi9821	CpG island 9821	85 bp proximal
Kif20a	kinesin family member 20A	625 bp upstream
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	within coordinates
Rr370356	regulatory region 370356	507 bp upstream
Rr405583	regulatory region 405583	727 bp upstream
Tssr5275	transcription start site region 5275	601 bp downstream
Tssr150465	transcription start site region 150465	622 bp upstream
Tssr150466	transcription start site region 150466	635 bp upstream
Tssr150467	transcription start site region 150467	956 bp upstream
Tssr150468	transcription start site region 150468	1010 bp upstream
Tssr150469	transcription start site region 150469	1043 bp upstream
Tssr152814	transcription start site region 152814	563 bp downstream
Tssr152815	transcription start site region 152815	773 bp downstream
Tssr152816	transcription start site region 152816	823 bp downstream