rs30027094 SNP Detail

Summary

• ID
  rs30027094
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29228402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATGTAG CTAGTCCTGA
  AACACCAGGG CCCCTTCTGG GGAGCTTAGT CTCTTCAATA AATGAGTTTA GAAATGGTCA
  AAATCAGAAG CCCATGGACA ATTTTTTTTT TTTTTTTTAG AGTTTAAAAG AAAAATTCCA
  GGGCAGGCAA GCTGTAAACC TCAGTAGCTG CCCAGAGGAG GAGAAAGGGG AAAAGGACCA
  M
  AAAGGCCACA GCAGTTGAGT TGAACCAGCA TGGAGGTCAG ACACATGTCC GGACAGGCAT
  CTGCATGGTC AGGCACAGAC CCTAAGCCAG AGTGTCAGCC AGTGAGCATG ATTAGAAGAG
  AGACGAGAAC TATCGTGCTT TCCTGCACGG TGGAAAGAAG TGTGCAGATG TAGGAAGCTG
  CAAGTGCGGC TCTGGCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49093202	NES12399921	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30027094					SNP	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093202	NES12399921	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29228402 () rs orientation: forward

Symbol	Name	Function Class
Rr388183	regulatory region 388183	within coordinates