rs30027096 SNP Detail

Summary

• ID
  rs30027096
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29227513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTCTC CTCTCCTCTC
  CTCTCCTCTC CTCTCCTCTC CTCTCCTCTC CTCTCCTCTC CTCTCCCTCT CCCTCTCCCT
  CTCCCTCTCC CTCTCCCTCT CCCTCTCCCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTGAAT GTGCTTATGT ATGATCAGAT GGTGTCTATG ATTGGCTGAA
  W
  CACAAGGCTC CACAAAACAA AAAACAAAAC ACCAATACTA AGTTAGGTGT TAGTTTGTCT
  GCATGCCAAG CTAGGATACA GTTTGCTAAA TCTGCACTAA AATGTGAGAC CGCCGCAGGC
  TTGCCTGTTT ACTTTGTTCT AACACTACAT TAGATGGTAA TGAACGTTAA AATATAAAGC
  TGAGAAGAGG GGAAGAGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49093205	NES12399918	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30027096					SNP	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093205	NES12399918	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29227513 () rs orientation: forward

Symbol	Name	Function Class
Rr388183	regulatory region 388183	153 bp upstream