rs30027263 SNP Detail

Summary

• ID
  rs30027263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78520782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGAGC ATGGCAGCAT
  CCAGACAAGA ATGGTACAGA AGGAGCTGAG AGTTCCATAT CTTCATCTGA AGGCTGCCAG
  TGGAAGACTG GCTCCCAGGC AGCTAGAATG AGGGTCTTAA AGCCCACACC CATAGTGACA
  CACTTCTACC AACAAGACCA CACCTCCAAA TAGTGCCACT CCCTGGGCCA AGCACATTCA
  M
  ACCACTACAT TGATTAAAAA CCAAATATAT CACCCATGCT TATGAAATAA AACATTGCAA
  AATTAGCACA GAATTTGCCA CAAAGTTGAA AGCTCTTTAG GGAAATTGAG GAAATTGTTA
  ATGAATGACA TATAGGAAGG ATGCAGGGAA AGGGGAAAAA TAAATAGAGG AGAGGCAAGA
  GAAAAGGAGG GATGTAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46364478	mCV22795017	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss136669083	ENSMUSSNP3053723	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30027263					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78520782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22073	CpG island 22073	1995 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	711 bp proximal
Rr683598	regulatory region 683598	1783 bp proximal
Tssr86295	transcription start site region 86295	1952 bp upstream
Tssr86296	transcription start site region 86296	1982 bp upstream