rs30027458 SNP Detail

Summary

• ID
  rs30027458
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63415007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATGATG AATTTTAGCT
  TTGGGAGACC TTAGGAGAGC AGGACCATAA CGACAAACCT CTCTGGGTCT ATGTATGTAT
  GTATGTATGT ATGTATGTGT GTGTGTGTGT GTGTGTGTGT GTATGTATGT ATGTATGTAT
  GTATGTATGT ATGATGTCTC TATCTGTAAA TATCTACATA TGTGAGGTAT GTCATTACCA
  S
  CCTGGCATAT AGAATAGTGC CTGTTAGAAA GTTAGCTACT TTCAATAACA GGACTATTAC
  TATTGGTCTT CTAATTAATA GAACATGGGA AATAAGCCTT ATGCCTTCTC AATACTTGGA
  AACATTCAGG AAATGCTGGC CCGAGGAATC GGCTTGTGTC ATGTGGATGT GCAGGGCACC
  TAGTCGTCCC CAATGCTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss47405508	NES11047900	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30027458					SNP	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47405508	NES11047900	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63415007 () rs orientation: forward

Symbol	Name	Function Class
Gm71047	predicted gene, 71047	1539 bp upstream