rs30028510 SNP Detail

Summary

• ID
  rs30028510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110768518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA GTGGTTAAGA GCACTGGCTG
  Y
  TCTTCCAGAG GTCCTGAGTT CAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46365331	mCV24998870	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss136960317	ENSMUSSNP6237636	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss323194885	CHEV_9_110841954	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30028510					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110768518 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	158 bp downstream
Rr192786	regulatory region 192786	1718 bp distal
Rr192787	regulatory region 192787	718 bp distal
Rr202610	regulatory region 202610	1751 bp distal
Rr207413	regulatory region 207413	1518 bp distal