rs30028517 SNP Detail

Summary

• ID
  rs30028517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29070985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAACTTTG TAACCAACTT CCTCCGAATT AGCGCTCAAG
  GTTTGCTGGC CCAAAGAAAC CTAGACAATA ACATCCCAGA AACAGAGATG CGCTCTCCAA
  R
  GTCGGTCCTC CAACCTTGCT AGGTGCCGGT TCCCACCCGA ATGCTGGACT GCCCTCTGCC
  AAAAGGCAAG CAGAGCACAC TCAATCCATT AGTTCCTTTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49093433	NES12402154	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30028517					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093433	NES12402154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29070985 () rs orientation: forward

Symbol	Name	Function Class
2610307P16Rik	RIKEN cDNA 2610307P16 gene	1580 bp upstream
Cpgi5396	CpG island 5396	1673 bp distal
Rr281171	regulatory region 281171	within coordinates
Tssr121896	transcription start site region 121896	1682 bp upstream
Tssr121897	transcription start site region 121897	1620 bp upstream
Tssr121898	transcription start site region 121898	1369 bp upstream