rs30028518 SNP Detail

Summary

• ID
  rs30028518
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29070552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGACACGC AGCCTTTTAT ATTCAGTCTT CAGGGCAAAG
  GGGGTTTAAA AAAAAACACT CAAACATTCC AAAGCAAATA TTCAACCTCC TGCTGGTGTC
  M
  ACGCACCTTA TATACTCTTT CTCCAAATCT AGACAGGGAA GACCCAATGA GTTGTTAAAT
  GTGAGGGTAA AGAGATGGGG TGAAAGGGGG CATAGGGAGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss49093434	NES12402153	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs30028518					SNP	C	C	C	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093434	NES12402153	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29070552 () rs orientation: forward

Symbol	Name	Function Class
2610307P16Rik	RIKEN cDNA 2610307P16 gene	1147 bp upstream
Cpgi5396	CpG island 5396	1240 bp distal
Rr281171	regulatory region 281171	within coordinates
Tssr121895	transcription start site region 121895	1878 bp upstream
Tssr121896	transcription start site region 121896	1249 bp upstream
Tssr121897	transcription start site region 121897	1187 bp upstream
Tssr121898	transcription start site region 121898	936 bp upstream