rs30028521 SNP Detail

Summary

• ID
  rs30028521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29067563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCCAGC AATTTAACTG
  AAGAAACTCT AAATGAAGAA GTTGATGCTA CTTTGTCCAG TGCTAACTTG CAGCGGTCCT
  GGCATCTTCA TGCTAGCGGC TGGTAGGTAT ATATCCAGTA AGAGAAATTC GAAGGCATTT
  CAGTAGAAGT ACTCCTGCTA AGTGGGTGAC ATGACTCTTG GAGTCGCTGG TATGACACCT
  R
  TACAATTAGA ATGTATTAAG GTTAGTTGTC GGGACAGTCT ATACACTCCC TCCCTAAAAG
  AATAACTGTC GTCTTAATTC CTTTCAGTCT TTGACATAAA GATTCAAAGC TCCCCGGCTC
  TGGCACCTTG CAGAATGCTA ACTCTCAGAA GTTAATGCAT TGTTTGGATG CTTCCTAGAG
  TCACCCGCAG TAGGATGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49093439	NES12402235	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30028521					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093439	NES12402235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29067563 () rs orientation: forward

Symbol	Name	Function Class
2610307P16Rik	RIKEN cDNA 2610307P16 gene	within coordinates
Cpgi5395	CpG island 5395	572 bp proximal
Cpgi5396	CpG island 5396	1460 bp proximal
Gm53780	predicted gene, 53780	within coordinates
Rr281171	regulatory region 281171	within coordinates
Tssr121893	transcription start site region 121893	639 bp downstream
Tssr121894	transcription start site region 121894	672 bp downstream
Tssr121895	transcription start site region 121895	1102 bp downstream
Tssr121896	transcription start site region 121896	1708 bp downstream
Tssr121897	transcription start site region 121897	1754 bp downstream