rs30028549 SNP Detail

Summary

• ID
  rs30028549
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67057301 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CATACAGGGG CACACCAAGA
  ATAGGTTAGT TGTGCTACTG TCATGGACAA TCCTAAAATT TTAAGCAATT TTAAACCATA
  AAGGTTTGTT TCTTGATGAT GTCTATCTTG CGAGTAAAAG TGGTTTAAGG GTACAGAGTG
  ATGCATCCTA GACACTGTTA TTATGACTTG GGTGTTGGCA GTCTACTAAA GGGAAAAGAA
  W
  TTTTTTTTAA GTTGCCTACA TTTTAATGCA ATTTATTCAT TCTTTCACAA CTTGGTACAC
  ACATAATATA CTAAGGACTT TAAATTTTTT TATTTGAATA AATCTGTTAT GAAAATATTT
  CAAGAATGAT TGTTCTGAAG CAAGTGACAG CCTTACTATA GCTGTAAGAG GAAGCATCAA
  AGGTAAGCAT TTGAAAATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39143877	mCV23328744	ABI	CRAMUS_MOUSE	f	SNP	T	T	A				A		A
ss52646857	NES15464907	PERLEGEN	MM_PANEL2	r	SNP	A		T	T	T	T		A	T	T	T		T	T	A	T		T
ss149259015	ENSMUSSNP3134202	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							T
ss324388729	CHEV_13_67010173	CHEVERUD	SCREENING_POP	r	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30028549					SNP	T	T	A	A	A	A	A	T	A	A	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52646857	NES15464907	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67057301 () rs orientation: reverse

Symbol	Name	Function Class
Mterf3	mitochondrial transcription termination factor 3	within coordinates
Ramacl	RNA guanine-7 methyltransferase activating subunit like	71 bp downstream
Rr273407	regulatory region 273407	1501 bp distal