rs30028570 SNP Detail

Summary

• ID
  rs30028570
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15197405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGAGGC CCTGCACCCT
  CTGTGCGCCC GCGGCCAGGG CGCAGCGGGC GAGGCTTGGG AGCGAGATGG GGCTGGCGGC
  AGCAGCGGCT CCCCCACCTA CTTGCTGGCG GCGAGGCGCG GGGGCCTGGG GCCAGCAGCG
  CGGCTCCCAG CTTCCATCCC GACTCTTGCT AAGAAGCGAA ACACGCCCCA CGTCAGCCTC
  W
  TCTGTTTAGA CTTTTCCAAC TGCCACTTTT AAGCTGTCAT TAAAGACCTG GGGCGCTCCC
  CAAAGGTTTG GGGCAAGTCC GCGCCGGTCT AGCCAGCCCC AGGAAAGTGC AAGAAAGAAA
  GATTGGGAGG GGCTGGTGGG AGGAGAGATG TGGGAAGAGC AGTTTTCCGG GACCCCAGGG
  ACCCACTTGC CACCCACTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39640880	mCV25032240	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss325532715	CHEV_18_15222857	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30028570					SNP	T	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15197405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	within coordinates
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	1267 bp upstream
Rr534350	regulatory region 534350	334 bp distal
Tssr152510	transcription start site region 152510	731 bp upstream
Tssr152511	transcription start site region 152511	693 bp upstream
Tssr152512	transcription start site region 152512	234 bp upstream
Tssr152513	transcription start site region 152513	208 bp upstream
Tssr152514	transcription start site region 152514	193 bp upstream
Tssr152515	transcription start site region 152515	122 bp upstream
Tssr152516	transcription start site region 152516	13 bp upstream
Tssr152517	transcription start site region 152517	within coordinates
Tssr152518	transcription start site region 152518	15 bp downstream
Tssr152519	transcription start site region 152519	73 bp downstream
Tssr152520	transcription start site region 152520	99 bp downstream