rs30028870 SNP Detail

Summary

• ID
  rs30028870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56529624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTCTGCC TCCTTGGCTG TTTAGACATA GGCTCAACAG
  CTGTCTTGGT TTTCTCAGGC CTGGAGGGCA TCCTGAGGTG TGAGATTCCT ACTATAGAAC
  W
  TTTAGAGCAA GCCAAGAGAG ACAGGCTGAC CTAACTTCCA GCTTCTTAAA CTGTGGGCCA
  CAACCTCATA CCGGGTCGTA TAACTGAGTG TGGGGCTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39144090	mCV22332055	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss149044652	ENSMUSSNP535735	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss324346616	CHEV_13_56483172	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30028870					SNP	A	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56529624 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	1624 bp distal
Rr276642	regulatory region 276642	1777 bp proximal
Rr284344	regulatory region 284344	within coordinates