rs30028899 SNP Detail

Summary

• ID
  rs30028899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44391851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTCTGC ATCCAGACCT
  GGAACCTACA TTGGGGGATG AGTCACAGCC ACACCCAGGG GAGCGCTCCA CAGGGCTGCT
  TCACGGGACA TATCACTCTT GGGTTTTATT ATGTACTACA TGTACGACAT TAGAGACCCC
  TGTAACCCAG CCACCACCAC CACCACTATA TTTTTGGTTG TGAGCCTAGC CTTTAACGGC
  Y
  AAGCCATCTC TCCAGCCTAA CACCACCACT ATAAATACTG ATTTCTGGAT CTACTATGAA
  CAGGGCTTAT GCTAAAAAGA ATTAGTGCTA CATACCTTTA ATCTTCGCAT TCGGGAGGCG
  GAGGCAAGTG AATTCCTGTG AGTTCGAGTC CAGCCTGCTC TACATAGAGA ATTCCAGACT
  ACCCAGGGCT ATATAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46365720	mCV22924112	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss136396216	ENSMUSSNP5194244	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30028899					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44391851 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1820 bp distal
Cpgi21660	CpG island 21660	1061 bp distal
Cpgi21661	CpG island 21661	253 bp distal
Cpgi21662	CpG island 21662	1929 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	757 bp upstream
Gm47205	predicted gene, 47205	960 bp downstream
Rr368728	regulatory region 368728	177 bp downstream
Rr677667	regulatory region 677667	793 bp distal
Rr677668	regulatory region 677668	1171 bp distal
Rr677669	regulatory region 677669	267 bp distal
Rr677670	regulatory region 677670	283 bp distal
Rr677671	regulatory region 677671	1781 bp proximal
Tssr84666	transcription start site region 84666	1977 bp upstream
Tssr89164	transcription start site region 89164	811 bp upstream
Tssr89165	transcription start site region 89165	774 bp upstream