rs30029219 SNP Detail

Summary

• ID
  rs30029219
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107427461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG GAACAGTTAG TTTCTCAATG
  K
  CCTTCCCTGG ATCTCTTGCA GCTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46364964	mCV24366228	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss136948282	ENSMUSSNP5285087	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss323191582	CHEV_9_107452593	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30029219					SNP	T	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107427461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	677 bp proximal
Gm34106	predicted gene, 34106	within coordinates
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	1291 bp upstream
Rr368855	regulatory region 368855	838 bp upstream
Tssr86984	transcription start site region 86984	508 bp upstream
Tssr86985	transcription start site region 86985	1157 bp upstream
Tssr86986	transcription start site region 86986	1254 bp upstream
Tssr91394	transcription start site region 91394	573 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	within coordinates