rs30029443 SNP Detail

Summary

• ID
  rs30029443
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100909518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTATGGA CGGTGGTTAT
  AGTCATCCTG CAATAAATGA AATGGCTTCA AAGTCTTCTC ATGTAGCCTC GCTTTATTTA
  AAATAGTTGG CAAGACGGCG ACATAAAATG GATGACAGTG GGGATACAGC ACCTTGGAGA
  AAAAGTGAAA AATGTAATTC TTGCACATTC ATCAGCCAGA CCAAAACATG GTTCATGAAA
  S
  CTCACTTCTA CAGGTTGGTA GCCTGAAGTG ATGATATCCC AGGCAGGCTC TACCAGCTTT
  CCAGACTGTA ATGTTTTCAG GAGGGGCTGG AAAGATGATT CAGCCATTAA GTGGGTACTC
  TTCTTGTAAG AGGACCTGAG TTTGGTTCCC AGTACCAAAA CTAGGCTATT CACAATTACC
  TCTAACTCCA GCTCCAGCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39143995	mCV23726404	ABI	CRAMUS_MOUSE	f	SNP		C					G		G
ss52685772	NES15536566	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	C	G		C	G	G	G	G	G	C
ss145091301	ENSMUSSNP2509649	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30029443					SNP	G	C	G	G	C	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685772	NES15536566	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100909518 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Rr280869	regulatory region 280869	1482 bp proximal