rs30029474 SNP Detail

Summary

• ID
  rs30029474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29067318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACTCCC AAATTATCAT
  TCCACTTCAG AAACTATCTA CAAAACACAG TCCCCAAGAA GGAAACATAA AGTCTTAAGT
  CACTTTAGGC GGGCAACAAC TCAAAACAAG GAGACAGATC TCCAGTGGCA TTAAGTATCA
  GGCCCAAAAG GAAGTGCTCG TGGGTGTCTA AGAAACATAC CTTCTACAAG TAGAGAATTC
  Y
  CGGGCATCAC ACTCCAATAA TCCACATAAG GAAAGCCTTG TCGAAAATCC CAGCAATTTA
  ACTGAAGAAA CTCTAAATGA AGAAGTTGAT GCTACTTTGT CCAGTGCTAA CTTGCAGCGG
  TCCTGGCATC TTCATGCTAG CGGCTGGTAG GTATATATCC AGTAAGAGAA ATTCGAAGGC
  ATTTCAGTAG AAGTACTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49093442	NES12402232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30029474					SNP	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093442	NES12402232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29067318 () rs orientation: forward

Symbol	Name	Function Class
2610307P16Rik	RIKEN cDNA 2610307P16 gene	within coordinates
Cpgi5395	CpG island 5395	817 bp proximal
Cpgi5396	CpG island 5396	1705 bp proximal
Gm53780	predicted gene, 53780	within coordinates
Rr281171	regulatory region 281171	within coordinates
Tssr121893	transcription start site region 121893	884 bp downstream
Tssr121894	transcription start site region 121894	917 bp downstream
Tssr121895	transcription start site region 121895	1347 bp downstream
Tssr121896	transcription start site region 121896	1953 bp downstream
Tssr121897	transcription start site region 121897	1999 bp downstream