rs30030057 SNP Detail

Summary

• ID
  rs30030057
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25792565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCTGA CTTCCCTCTC
  CTCCAGGATC CAAAACCACA CACCTTCTCC TTGCTTTGTT ATTCAAACAC ATTCGTCCTG
  AAAAATAATT TTTTGTATGT TTTTTCTTAT TGTTCTTTGA GGGATATTTG GCCCAAAGAA
  ATTTACTTTG AATTTTGCTT GAAGCTCAAC TAATGGCACC GAAAAAAAAA TTATCTTCAT
  K
  TTTGAAGGTT CTGCAAGAGA TGAAGACATA GTTTAATAAG AAACAATCTC TCTTCTTGAG
  CAACTATCAC TGTTCTGGAA GAGTCAAAAA AAAAATCTAA AGTAAAATGG AGCCTAGAGC
  CCAACATTAC ATGGCTTTAG CGCTCTGGCA GAAGTAAGGG TGATATCTTG CAGCACCAGA
  GAGAGCAAAA ATACACTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47407027	NES11357334	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G		G	G	T		T
ss324304638	CHEV_13_25700451	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30030057					SNP	T	T	T	T	T	T	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407027	NES11357334	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25792565 () rs orientation: forward

Symbol	Name	Function Class
Rr476237	regulatory region 476237	1090 bp proximal