rs30030812 SNP Detail

Summary

• ID
  rs30030812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77868319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTAGAAC TGAAGAGAAT
  AGGGTCTATA GAGACGCCTC GGTGGCTGAG AGCACTTGCT GCTCTGTGGA GGACCAGGGT
  TTGGATCCCA GCACCCATTT GACTGCTCAT AACCATCTGT AACTCCAGGT CTGGGGTGAT
  GGGCTAGTCT TACTATCCAT GTAGCTGAGC ATGGCTTAGA CCGTCCAGCT TTGTTGTGTC
  Y
  GCCTCCTAAG GGTTAAGATT AAAGCATGTG TCCTCTGCAC CCGCCGGGGC ATCTTTTGGT
  TTATATACAC TCATTATTTT CTAGCCCTAG GTAACTTTAA AGCATATTTG AGAAGTTATA
  TTACTACCTT GTTGTAGTTT GTTGAGATTG GGACTTGGTG TAGTCTAGAC TGGCCAGGGA
  TTGCATGTAG CTGAGACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39641469	mCV22975761	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147555414	ENSMUSSNP4805637	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30030812					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77868319 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Tssr152044	transcription start site region 152044	1822 bp downstream
Tssr152045	transcription start site region 152045	722 bp downstream
Tssr152046	transcription start site region 152046	499 bp downstream
Tssr152047	transcription start site region 152047	1220 bp upstream