rs30031054 SNP Detail

Summary

• ID
  rs30031054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44389360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGGCAA AGATTGTGGG
  GGACTTCTTC CATATCTCGG AGGCGTTCTC TAGCCAGTCT ACATCTCCAG CGAGGATACT
  TTATTTTAGC AAGTGGGTGT TAAGCCAGAC ATAACCACTA GGGGACAGTA AAAACAACCC
  TTAAGGTCAG TATTCCTCCA AGACCCCACC TACTCTCACC TGAGGCCAAG ATGGGCAGTG
  Y
  CTCACCTGGC TTTCACCTAG CGCTCTGTTA ACCACTTCCT GCCTAATCTG AAGTACCTCC
  CCGAGATGGA GTCGTTCTTA GTAGAACTGG GGGCCAATTT TGATCGGAGG GAGGGTGTCC
  AGTCCGGGGG TGGGAGTGAA GTCATGGTTT CCAGAAACTC AGACCCTTGT CCTTGTCCTA
  GCTGGAGAGG CTATAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46364979	mCV25082968	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss136396159	ENSMUSSNP2242944	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30031054					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44389360 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	377 bp proximal
Cpgi21660	CpG island 21660	1093 bp proximal
Cpgi21661	CpG island 21661	1844 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm22540	predicted gene, 22540	1548 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1760 bp distal
Rr203857	regulatory region 203857	1794 bp distal
Rr206312	regulatory region 206312	within coordinates
Rr209143	regulatory region 209143	960 bp distal
Tssr89164	transcription start site region 89164	1661 bp downstream
Tssr89165	transcription start site region 89165	1689 bp downstream