rs30031912 SNP Detail

Summary

• ID
  rs30031912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25794350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTGGC ATGGGAGAAG
  ATAAGAGGGT GAAGTTTGGG TAAGGACCAA GTAGGGGAGG CTGACAGGCT GGATTCAGTG
  GCTATCTCTG CAGGCTAATC CTCCTCTGGG CTCTCATCCT CATTTGATGA AGTCTTTCCC
  AAATCTGAAA AGGACTTTTG CTTTCCTATT TTTAGTATGA TAACTCGGGG ACTTATTATA
  Y
  TCCCACACAG TTCTCAGGGA ATGGTATCTA AGTTTTGTTC ATGGTTGAAA AATTTCTTCT
  TTTCCACAAG ATAAGCCCAG TGACATTTTT CACCGCTTCT CTGGATGAAA AACAAAAATC
  CAGTCACAAA TAGCTGAGCA TACATAAATA TGTAGCATGG GGCTATGCTC ATTTATCATT
  GTATCTCAGT GTCTGGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47407054	NES11357344	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C		C	C	T	C		T
ss324304645	CHEV_13_25702236	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30031912					SNP	T	T	T	T	T	C	T	T	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407054	NES11357344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25794350 () rs orientation: forward

Symbol	Name	Function Class
Rr476237	regulatory region 476237	380 bp distal
Rr476238	regulatory region 476238	1709 bp proximal