rs30032900 SNP Detail

Summary

• ID
  rs30032900
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25794876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACTGA GGTTGTAATA
  AGTCATGCAG AACATGTGTA ATCAATTCTT TTGTTAAGAA TTGGTTCATT GGCACCAGTG
  AGTTAGTAGA TAAAAACAGT TGCTGCCAAA CCTTATGACT TGAGTTTGAT CCCATGGAAC
  CATAATGTAG AAGAAGAGAA CCATTGACCC TCTGGCTTCC ACATGCATAC TGTGGCATGC
  M
  TACCCATATG TATAAATGAA TATATTTTTA AAAAGAATTG GTTCCCTACT GGGCATGGTG
  GCATTTATCT GTCATCCAAG CACTAGGGAG AATGAAGCAA GATGTGAGTT GTAAGCCAGC
  CTAGGACACA TAGGAAGGCT CTACCTTTAA AAGCATAAGT AAAAAAGTTG AAACTGTCTT
  TAATTATTTA AGATCAAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47407063	NES11357347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A		A	A		C
ss324304649	CHEV_13_25702762	CHEVERUD	SCREENING_POP	f	SNP									C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30032900					SNP	C	C	C	C	C	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407063	NES11357347	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25794876 () rs orientation: forward

Symbol	Name	Function Class
Rr476237	regulatory region 476237	906 bp distal
Rr476238	regulatory region 476238	1183 bp proximal