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rs30033637 SNP Detail
Summary
  • ID
    rs30033637
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:25777982 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAAAAGCAG GTGGTTATCT
    ATGGCAAGTG CTGATTCACT CCTACCACAT GAGTTTCAGG TTTACCTAGG ACAGTTGAGA
    AGAAGCAATT ACCTGACCCA ACTTTTATCA CATGGTGAAA AAACCCAGAA TTAAGCCATA
    TTAATTAGAT GAGTTCGGAA AATGGATAAT TTCCGAACAT GAGATTGTTC ACTTTGTCTA
    Y
    ACCTTAATAA CTGCTACATT TTAGGATGGA GTTCTAGAAG ACTAGCTATA GAACAAGGCT
    GTGGCTAGGT TTGGAATTTC AGGTTAATAT TTTTTTGAAT TTATGCTTCT TATTTATAAG
    AGGAAAGAAA TGCTATCTAT TGTATGTATT TCAACTTTGC CAAAGGGCTC CATATCAAAT
    TGCATGATAT AGAATAACCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss47406970 NES11358132 PERLEGEN MM_PANEL2 f SNP T T T T T T T C C C T C T
ss324304508 CHEV_13_25685868 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs30033637 SNP T T T T T T T C T C C T C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47406970 NES11358132 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:25777982 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr275391 regulatory region 275391 619 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory