rs30033640 SNP Detail

Summary

• ID
  rs30033640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25778046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGACAG TTGAGAAGAA
  GCAATTACCT GACCCAACTT TTATCACATG GTGAAAAAAC CCAGAATTAA GCCATATTAA
  TTAGATGAGT TCGGAAAATG GATAATTTCC GAACATGAGA TTGTTCACTT TGTCTATACC
  TTAATAACTG CTACATTTTA GGATGGAGTT CTAGAAGACT AGCTATAGAA CAAGGCTGTG
  R
  CTAGGTTTGG AATTTCAGGT TAATATTTTT TTGAATTTAT GCTTCTTATT TATAAGAGGA
  AAGAAATGCT ATCTATTGTA TGTATTTCAA CTTTGCCAAA GGGCTCCATA TCAAATTGCA
  TGATATAGAA TAACCTTTCC ATAACAGCCA GTCACACGGT GTGTTGTTAC AGACACCAAG
  TCACTTACAG TTAGTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47406973	NES11358133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		A	A	G	A		G
ss324304509	CHEV_13_25685932	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30033640					SNP	G	G	G	G	G	G	G	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47406973	NES11358133	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25778046 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	555 bp proximal