rs30033654 SNP Detail

Summary

• ID
  rs30033654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106697678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC AAGTCTGCTA TAGAGTCTAA
  R
  TAAATAATGG TCATTATAGC TCAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46365568	mCV24360043	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss136940621	ENSMUSSNP4186081	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323187382	CHEV_9_106722810	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30033654					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106697678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	1086 bp proximal
Dcaf1	DDB1 and CUL4 associated factor 1	1395 bp upstream
Rr368848	regulatory region 368848	1128 bp upstream
Rr401655	regulatory region 401655	1967 bp upstream
Rr686399	regulatory region 686399	972 bp distal
Rr686400	regulatory region 686400	1069 bp distal
Rr686401	regulatory region 686401	607 bp distal
Rr686402	regulatory region 686402	905 bp proximal
Rr686403	regulatory region 686403	1406 bp proximal
Tssr86935	transcription start site region 86935	1415 bp upstream
Tssr86936	transcription start site region 86936	1520 bp upstream
Tssr86937	transcription start site region 86937	1544 bp upstream