rs30033718 SNP Detail

Summary

• ID
  rs30033718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25795309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTGGAG GTCGGAGGAT
  GATGTCAGTA GTTGGTTTTC ACTTTTCTCT GTTCTATGTG CTCCTGAGGG TCAAGCTGGG
  TTTGACCGGC TTCTGTGGCA AGCACTTGTA CCATTGTTCC ATCTTTTTGC CTCAACAACT
  TTATTGTAGA CCTGCAAGAT CTGATCTGCA GTACTAAAGT TGTTCCAGCC AAACCAGGTA
  R
  TTTTGATGTA GGGTATTCAT GTTTCACGTT CAACTTATGT GTAAGTTTAT ATAACTTTCT
  ATATTTAGGA AATTTAACTT TTCTAGCATC TGGTAAAATT TCTAAGTAAA CATGAATAGA
  CAACACCCAA ATGCCAATTT CCCAACTGGA TTGATGATGG TGGTTTGAGT GAGAATGCCT
  CCTACAGGTC CCCCAGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47407072	NES11357201	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A		A	A	G	A		G
ss324304653	CHEV_13_25703195	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30033718					SNP	G	G	G	G	G	A	G	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407072	NES11357201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25795309 () rs orientation: forward

Symbol	Name	Function Class
Rr476237	regulatory region 476237	1339 bp distal
Rr476238	regulatory region 476238	750 bp proximal