rs30034012 SNP Detail

Summary

• ID
  rs30034012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45235885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGCCCT GTTCAGCTAT
  ATGGGACTTT TGAAAAGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGATGCAT GCATGTGAGT
  GCACAGGTAT ATGAATGTAT GCAGATCAGA GCAGCAGGTC CGTGTCTTCC TTTATTGCTG
  Y
  TCTCCTTATT TTATTACTTT AAGACAAGCT CTCTCCTTGA ACCAGAAGCT CACTGGTTCT
  GTTAGTCTGT GGCTGATCAG AGTCGCAGCA CCCTTATCAC TAGAAGGACA GCCACACACA
  GCCAAGTCCA GCTTTCTGCC CTCCTGGTCT CCCATGATGC ACCATAACCT CTAGAAAGTC
  CAACAAGCTG TGAATGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46367893	mCV24048441	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136409303	ENSMUSSNP1077142	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	T
ss322943010	CHEV_9_45132670	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30034012					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45235885 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	111 bp proximal
Rr203900	regulatory region 203900	1008 bp proximal
Rr203901	regulatory region 203901	1836 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates