rs30034411 SNP Detail

Summary

• ID
  rs30034411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25778248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTTTGGA ATTTCAGGTT
  AATATTTTTT TGAATTTATG CTTCTTATTT ATAAGAGGAA AGAAATGCTA TCTATTGTAT
  GTATTTCAAC TTTGCCAAAG GGCTCCATAT CAAATTGCAT GATATAGAAT AACCTTTCCA
  TAACAGCCAG TCACACGGTG TGTTGTTACA GACACCAAGT CACTTACAGT TAGTCTGAAT
  Y
  CACTCAGCTC CAAGGATCAT AAGTACCCAT TGTCATTCAC ATTTTTCTAA CAGCCTCTAA
  GATTTAGGGC TTTATCAATA ATGACTTTTA TATAGTCATA ATTTGATGAG TTTTTTTTTA
  TATTCAGCAA TCAATGCTAC TCAAAGCTTT CAGCCAGTGA TTCCACTAAG CATTAATTCA
  TCAAATTATC AAAATGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47406985	NES11358138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	T	C	C		C
ss324304514	CHEV_13_25686134	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30034411					SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47406985	NES11358138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25778248 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	353 bp proximal