rs30035269 SNP Detail

Summary

• ID
  rs30035269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25778754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACCTC CCCCCCCCCC
  CCATACTGAG GACTTGTAAA ACGGAAGAAA CACCTTTGGG GAACTGTAAG GGTTTTTGAG
  TGAGCATAGT AGCTCAGAAA ACTCATCAGT ATGTATTAAA ACTGCACAGG GAAAACTGTC
  AGGCTTCTAG AGGCAAGTAA CACATCAAAG AGACAAACTA CCCGCTGCCG GGGCTCAGGC
  Y
  GACATGAATA TATATCCAAC TGTGGGAAAT ATGGCCAGAC CCAACAGTGG AAAGGATGCT
  CAGCACCCAC ACAGAGCATG ACTGATTATA GGCAACCCCT TCCCCTGCAA TGCTAAGAAG
  GCTGGTCCCT GGACAACAGC CTACGTGATA AATCTGACTT CACAGAGCAT AAAATGCCTG
  CTTTCACTCT GACACTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47406994	NES11358141	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		C		C	T	C		C
ss148814776	ENSMUSSNP6919752	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T				C
ss324304517	CHEV_13_25686640	CHEVERUD	SCREENING_POP	f	SNP								T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30035269					SNP	T	T	T	T	T	T	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47406994	NES11358141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25778754 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	within coordinates